KvarQ
Installing KvarQ
Precompiled packages
Installing KvarQ From Source
Using KvarQ Command Line Interface (CLI)
Using The Command Line
Loading of Testsuites
Scanning a File
Extracting results from a batch of scans
Showing information about testsuites
Directly Analysing a .fastq
Showing Results
Updating Results
More Usage Examples
Using KvarQ Graphical User Interface (GUI)
Launching the GUI
Configuring KvarQ
The Scanner
The Explorer
KvarQ testsuites
Rolling your own testsuite
Versions, Compatibility
Annotated example
Tutorial
Ebola Outbreak 2014
Creating a new SNP testsuite
Understanding the Scanning Process
Overview
Configuration Parameters
Hacking KvarQ
About flanks
About positions
About the complementary DNA strand
Sequence of tests
About clonal variants (“heterozygous calls”)
Glossary
How to cite
Changelog
version 0.12.2
version 0.12.1
version 0.11.3
version 0.11.2
version 0.11.1
version 0.10.10
version 0.10.9
version 0.10.8
version 0.10.7
version 0.10.6
version 0.10.5
KvarQ
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Welcome to KvarQ’s documentation!
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Welcome to KvarQ’s documentation!
¶
Contents
¶
Installing KvarQ
Precompiled packages
Installing KvarQ From Source
Using KvarQ Command Line Interface (CLI)
Using The Command Line
Loading of Testsuites
Scanning a File
Extracting results from a batch of scans
Showing information about testsuites
Directly Analysing a .fastq
Showing Results
Updating Results
More Usage Examples
Using KvarQ Graphical User Interface (GUI)
Launching the GUI
Configuring KvarQ
The Scanner
The Explorer
KvarQ testsuites
Rolling your own testsuite
Versions, Compatibility
Annotated example
Tutorial
Ebola Outbreak 2014
Creating a new SNP testsuite
Understanding the Scanning Process
Overview
Configuration Parameters
Hacking KvarQ
About flanks
About positions
About the complementary DNA strand
Sequence of tests
About clonal variants (“heterozygous calls”)
Glossary
How to cite
Changelog
version 0.12.2
version 0.12.1
version 0.11.3
version 0.11.2
version 0.11.1
version 0.10.10
version 0.10.9
version 0.10.8
version 0.10.7
version 0.10.6
version 0.10.5
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